Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs765225 | chr1:184015707 | C/G | 1.33E-13 | 487 | 15 | 17.13 | 20.9 | KM Plot |
| THCA | rs76527279 | chr7:16436229 | C/T | 2.92E-9 | 485 | 15.13 | 17.73 | 17.77 | KM Plot |
| THCA | rs76533482 | chr3:56600186 | C/T | 4.33E-6 | 483 | 16.92 | 12.35 | 8.47 | KM Plot |
| THCA | rs76538455 | chr7:44338204 | G/A | 1.08E-5 | 486 | 15.9 | 16.3 | 12.7 | KM Plot |
| THCA | rs76547603 | chr4:39483485 | G/C | 4.44E-15 | 489 | 15.9 | 17.63 | 6.1 | KM Plot |
| THCA | rs76548975 | chr16:2945992 | G/T | 0.000192 | 485 | 15.13 | 17.97 | 15.4 | KM Plot |
| THCA | rs76551337 | chr8:144563622 | A/G | 3.48E-9 | 476 | 16.73 | 14.73 | 12.67 | KM Plot |
| THCA | rs76558755 | chr14:59676851 | C/T | 0 | 488 | 15.9 | 16.4 | 3.53 | KM Plot |
| THCA | rs76579102 | chr3:56539077 | G/T | 5.95E-5 | 488 | 16.65 | 13.1 | 8.97 | KM Plot |
| THCA | rs7659993 | chr4:88201203 | G/T | 1.89E-15 | 485 | 16.47 | 14.92 | 12.93 | KM Plot |
| THCA | rs76601129 | chr1:220808217 | A/G | 2.78E-5 | 488 | 15.87 | 16.97 | 0.23 | KM Plot |
| THCA | rs7660262 | chr4:84639697 | T/G | 6.52E-6 | 484 | 16.02 | 14.9 | 18.47 | KM Plot |
| THCA | rs76618172 | chr1:224394337 | GC/G | 7.17E-5 | 484 | 12.52 | 14.47 | 16.67 | KM Plot |
| THCA | rs76624540 | chr1:220770932 | A/T | 2.55E-5 | 489 | 15.9 | 16.8 | 17.17 | KM Plot |
| THCA | rs76625256 | chr1:91739842 | T/C | 8.65E-6 | 484 | 15.68 | 17.03 | 17.77 | KM Plot |